The 18S ribosomal RNA targeted loci project is a RefSeq curated data set sourced from INSDC records. At a minimum the sequence contains most of the variable V4 region and part of the V5 region and each record contain a collection identifier (predominantly type material) from a public collection. The presence of the 18S signature has been verified by the ribovore pipeline (https://github.com/nawrockie/ribovore) using hidden Markov and covariance models. Other verification steps for example checking for vector sequences, too many ambiguous nucleotides, and misassembled sequences are also included. SSU RefSeq accessions (NG_ ) include sequences mostly obtained from type specimens and a few from reference specimens. Type and reference identifiers are curated by NCBI Taxonomy. The collection source of type material is indicated in each record and collection acronyms follows the collection codes maintained at https://www.ncbi.nlm.nih.gov/biocollections/. All sequences will have the same project ID and can be found as such. Database URL: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA39195.
GBIF url: https://www.gbif.org/dataset/3bfbda20-1a91-4cf9-992f-bc1e9e5b7dad
Citation: Robbertse B (2024). Fungal 18S Ribosomal RNA (SSU) RefSeq Targeted Loci Project. National Center for Biotechnology Information (NCBI). Occurrence dataset https://doi.org/10.15468/gpmmya accessed via GBIF.org on 2024-06-17.
GBIF url: https://www.gbif.org/dataset/3bfbda20-1a91-4cf9-992f-bc1e9e5b7dad
Citation: Robbertse B (2024). Fungal 18S Ribosomal RNA (SSU) RefSeq Targeted Loci Project. National Center for Biotechnology Information (NCBI). Occurrence dataset https://doi.org/10.15468/gpmmya accessed via GBIF.org on 2024-06-17.
資料集編號
3bfbda20-1a91-4cf9-992f-bc1e9e5b7dad (DatasetUUID)
其他標題
資料集作者
Barbara Robbertse
資料集發佈者
National Center for Biotechnology Information (NCBI)
資料集來源
GBIF
資料集標籤
資料集關鍵字
授權
創用CC-姓名標示
詮釋資料更新日期
2024-08-28
觀測資料最新匯入日期
類群
真菌類
紀錄筆數
24
下載次數
244